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The monastery is believed to have been built when Saint Clement arrived in Ohrid, at the request of Boris I of Bulgaria and restored an old church. Sources say that Saint Clement was not satisfied with the size of the church and therefore built a new one over it and assigned Saint Panteleimon as its patron saint.

Saint Clement used his newly created monastery as a liturgical building and a place for teaching his disciples his variation of the Glagolitic alphabet, known as the Cyrillic alphabet. Clement personally built a crypt inside the monastery in which he was buried after his death in 916, his tomb still exists today.

In the 15th Century, Ottoman Turks converted the monastery into a mosque but during the beginning of the 16th century allowed ruined churches and monasteries to be restored, therefore, so was Saint Clement's monastery. The monastery was again ruined during the end of the 16th century or the beginning of the 17th century and yet another mosque, called Imaret Mosque, was erected by the Ottomans.

Apart from the monastery's many reconstructions during the Ottoman empire, it has recently undergone extensive reconstruction and excavation. Reconstruction started on December 8, 2000 and the physical church was fully reconstructed by August 10, 2002. Most of Saint Clement's relics were returned to the church. A partially ruined bell tower was restored on the right side of the monastery and the floors of the interior of the church have been reconstructed with marble. Reconstruction was carried out by hand using materials used to build the original church in order to preserve the original spirituality of the monastery. Machines were only used to polish the interior during the reconstruction of the monastery.

On October 10, 2007, a depot of approximately 2,383 Venetian coins was discovered by archaeologists while excavating the monastery. A prominent archaeologist of the Republic of Macedonian, Pasko Kuzman, stated that the coins are of special significance because they indicate that Ohrid and Venice were commercially linked.

With it's architecture now it is one of the best looking monasteries in Ohrid. I hope you like it...